Paul-Henry Cournede

Laboratoire

Mathématiques et Informatique pour la Complexité et les Systèmes

Mots cles

Biomathematics, Statistics, Statistical Learning, Artificial Intelligence, Oncology

Résumé

# BJ, Centrale Paris (97), Part III of the Mathematical Tripos, University of Cambridge # PhD Centrale Paris (2001), HDR Univ. Montpellier (2009)

Publications (209)

24/06/2025

Clonal memory of cell division in humans diverges between healthy haematopoiesis and acute myeloid leukaemia

A Donada , G Hermange , T Tocci , A Midoun , G Prevedello , L Hadj Abed , D Dupré , W Sun , I Milo , S Tenreira Bento , C Pospori , A Innes , C Willekens , J Vargaftig , D Michonneau , C Lo Celso , N Servant , Kr Duffy , H Isambert , Ph Cournède , Paul-Henry Cournede

Article dans une revue 17/06/2025

Multimodal CustOmics: A unified and interpretable multi-task deep learning framework for multimodal integrative data analysis in oncology

David Planchard , Julien Adam , Ken Olaussen , Stefan Michiels , Maria Vakalopoulou , Paul-Henry Cournede

13/06/2025

EVALUATION OF MACHINE-LEARNING MODELS TO MEASURE INDIVIDUALIZED TREATMENT EFFECTS FROM RANDOMIZED CLINICAL TRIAL DATA WITH TIME-TO-EVENT OUTCOMES

Roblin Elvire , Stefan Michiels , Paul-Henry Cournede

Chapitre d'ouvrage 15/05/2025

The Transition from the Single Plant to the Stand

Frédéric Blaise , Philippe de Reffye , Mengzhen Kang , Paul-Henry Cournede

Article dans une revue 01/01/2025

Prognostic significance of early on-treatment evolution of circulating tumor DNA in advanced ER+/HER2- breast cancer

A Mamann , Y Pradat , F C Bidard , S Delaloge , L Cabel , I Faull , S Marques , T Bachelot , F Dalenc , T de la Motte Rouge , B Pistilli , J Samaniego , J S Frenel , C Levy , J M Ferrero , R Sabatier , S Ladoire , C Chakiba , A C Hardy , J Lemonnier , Paul-Henry Cournede

13/09/2024

Novae: a graph-based foundation model for spatial transcriptomics data

Quentin Blampey , Nadège Bercovici , Fabrice André , Paul-Henry Cournede

Article dans une revue 13/09/2024

Novae: a graph-based foundation model for spatial transcriptomics data

Quentin Blampey , Nadège Bercovici , Fabrice André , Paul-Henry Cournede

Communication dans un congrès 02/07/2024

Counterfactual Analysis for Digital Histopathology Slides Using Human Interpretable Features

Stefan Michiels , William Lotter , Maria Vakalopoulou , Paul-Henry Cournede

Article dans une revue 15/06/2024

Mathematical modelling, selection and hierarchical inference to determine the minimal dose in IFNα therapy against myeloproliferative neoplasms

William Vainchenker , Isabelle Plo , Paul-Henry Cournede

Article dans une revue 01/04/2024

Contrasted reaction norms of wheat yield in pure vs mixed stands explained by tillering plasticities and shade avoidance

Meije Gawinowski , Jérôme Enjalbert , Paul-Henry P.-H. Cournède , Timothée Flutre , Paul-Henry Cournede

Communication dans un congrès 01/04/2024

Contrasted reaction norms of wheat yield in pure vs mixed stands explained by tillering plasticities and shade avoidance

Meije Gawinowski , Jérôme Enjalbert , Paul-Henry P.-H. Cournède , Timothée Flutre , Paul-Henry Cournede

Article dans une revue 23/02/2024

Moving toward precision medicine to predict drug sensitivity in patients with metastatic breast cancer

M. Bottosso , F. Mosele , S. Michiels , Paul-Henry P.-H. Cournède , S. Dogan , C. Labaki , F Fabrice André , Paul-Henry Cournede

Article dans une revue 22/02/2024

A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization

Paul-Henry Cournede

Article dans une revue 01/01/2024

Confidence intervals of survival predictions with neural networks trained on molecular data

Elvire Roblin , Stefan Michiels , Paul-Henry Cournede

Article dans une revue 01/12/2023

Moving toward precision oncology centers V2.0

S. Dogan , Paul-Henry P.-H. Cournède , E. Solary , J.-M. Heard , M. Aldea , T. Conroy , C. Robert , F. André , Paul-Henry Cournede

Article dans une revue 23/11/2023

Machine learning identifies a profile of inadequate responder to methotrexate in rheumatoid arthritis

Julien Duquesne , Vincent Bouget , Bruno Fautrel , Francis Guillemin , Pascal de Jong , Judith Heutz , Samuel Bitoun , Marloes Verstappen , Annette van der Helm-van Mil , Xavier Mariette , Paul-Henry Cournede

Article dans une revue 11/11/2023

BR55 Ultrasound Molecular Imaging of Clear Cell Renal Cell Carcinoma Reflects Tumor Vascular Expression of VEGFR-2 in a Patient-Derived Xenograft Model

Jean Courcier , Ingrid Leguerney , Baya Benatsou , Sibylle Pochon , Isabelle Tardy , Laurence Albiges , Alexandre de La Taille , Nathalie Lassau , Alexandre Ingels , Paul-Henry Cournede

Article dans une revue 30/10/2023

Optimizing IFN Alpha Therapy against Myeloproliferative Neoplasms

Isabelle Plo , Paul-Henry Cournede

Communication dans un congrès 08/10/2023

Structured State Space Models for Multiple Instance Learning in Digital Pathology

Joseph Boyd , Paul-Henry P.-H. Cournède , Maria Vakalopoulou , Paul-Henry Cournede , Stergios Christodoulidis

Communication dans un congrès 02/10/2023

Spatio-Temporal Analysis of Patient-Derived Organoid Videos Using Deep Learning for the Prediction of Drug Efficacy

Emilie Gontran , Jérôme Cartry , Jacques RR Mathieu , Sabrina Bedja , Alice Boilève , Fanny Jaulin , Paul-Henry Cournede , Stergios Christodoulidis

Communication dans un congrès 01/10/2023

142P Correlating total tumor volume on CT-Scan and liquid biopsy ctDNA in 1017 patients with metastatic cancer: A novel study

Y. Belkouchi , L. Dawi , L. Lawrance , S. Ammari , D. Vasseur , F. Wirth , O. Gautier , Paul-Henry P.-H. Cournède , J. Hadchiti , C. David , F. Bidault , C. Balleyguier , M. Kind , A. Italiano , N. Lassau , Paul-Henry Cournede , Hugues Talbot

Communication dans un congrès 01/10/2023

1022MO Predicting overall survival of patients with melanoma and NSCLC treated with immunotherapy using AI combining total tumor volume and tumor heterogeneity on CT-Scans

Lama Dawi , Samy Ammari , Joya Hadchiti , L. Lawrance , F. Wirth , Aline Bertin , S. Morer , N. Billet , Corinne Balleyguier , Nathalie Lassau , Paul-Henry Cournede , Hugues Talbot

Article dans une revue 20/09/2023

A biology-driven deep generative model for cell-type annotation in cytometry

Quentin Blampey , Nadège Bercovici , Charles-Antoine Dutertre , Isabelle Pic , Joana Mourato Ribeiro , Fabrice André , Paul-Henry Cournede

Article dans une revue 15/09/2023

Improving HLA typing imputation accuracy and eplet identification with local next‐generation sequencing training data

Véronique Letort , Cédric Usureau , Debora Jorge-Cordeiro , Jérémy Siemowski , Paul‐henry Cournede , Jean‐luc Taupin , Véronique Le Chevalier , Paul-Henry Cournede

Communication dans un congrès 09/09/2023

A Formal Approach for Tuning Stochastic Oscillators

Mahmoud Bentriou , Paul-Henry P.-H. Cournède , Paolo Ballarini , Paul-Henry Cournede

Article dans une revue 07/09/2023

Synergic prognostic value of 3D CT scan subcutaneous fat and muscle masses for immunotherapy-treated cancer

Pierre Decazes , Samy Ammari , Léo Mottay , Littisha Lawrance , Antoine de Prévia , Siham Farhane , Paul-Henry P.-H. Cournède , Aurélien Marabelle , Florian Guisier , David Planchard , Tony Ibrahim , Caroline Robert , Fabrice Barlesi , Pierre Vera , Nathalie Lassau , Hugues Talbot , Paul-Henry Cournede

Article dans une revue 04/05/2023

New calibration setup for quantitative DCE‐US imaging protocol: Toward standardization

Isaline Hoferer , Laurène Jourdain , Charly Girot , Baya Benatsou , Ingrid Leguerney , Paul‐henry Cournede , Abderahmane Marouf , Yannick Hoarau , Nathalie Lassau , Stéphanie Pitre-Champagnat , Paul-Henry Cournede

Article dans une revue 14/04/2023

Better than RECIST and Faster than iRECIST: Defining the Immunotherapy Progression Decision Score to Better Manage Progressive Tumors on Immunotherapy

Nathalie Lassau , Littisha Lawrance , Siham Farhane , Rahma Feki-Mkaouar , Joya Hadchiti , Lama Dawi , Julien Vibert , Clara Cousteix , Camille Mazza , Michele Kind , Antoine Italiano , Aurélien Marabelle , Samy Ammari , Stephane Champiat , Hugues Talbot , Paul-Henry Cournede

Communication dans un congrès 06/04/2023

Developing WHEAMM, a new FSPM for the simulation of wheat cultivar mixtures. Feedbacks on model conception, sensitivity analysis and automatic calibration in Julia

Meije Gawinowski , Jérôme Enjalbert , Paul-Henry P.-H. Cournède , Timothée Flutre , Paul-Henry Cournede

Communication dans un congrès 03/03/2023

Etude des mélanges de variétés de blé tendre avec une approche interdisciplinaire entre expérimentation au champ et modélisation mécaniste

Meije Gawinowski , Jérôme Enjalbert , Paul-Henry P.-H. Cournède , Timothée Flutre , Paul-Henry Cournede